fatalx: (ineigenstrat) too many lines in file
syauwjl opened this issue · comments
qpDstat version: 900
Rsa.snp.snp.chr_change: genetic distance set from physical distance
fatalx: (ineigenstrat) too many lines in file 13865661 13865661
what wrong with that? Thanks!
1) The number of data lines in your .geno file exceeds the number of snps.
Obviously this is an error. Please check this using wc
2) If this is human data, 13M snps is probably excessive for your purposes.
After sorting out problem 1, try downsampling by a factor of at least 10.
[convertf will do that for you]
Nick
…On Sat, Mar 14, 2020 at 4:43 AM syauwjl ***@***.***> wrote:
qpDstat version: 900
Rsa.snp.snp.chr_change: genetic distance set from physical distance
fatalx: (ineigenstrat) too many lines in file 13865661 13865661
what wrong with that? Thanks!
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Thanks for the quick answer.
Yes, the number of data lines in my .geno file exceeds the number of snps.