DRL

blobtools

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets

kinfin

Taxon-aware analysis of clustered protein sequences

blobtools-light

Light version blobtools package - NO LONGER MAINTAINED! DO NOT USE!

gIMble

A genome-wide IM blockwise likelihood estimation toolkit

SMBE-SGE-2019

Material for SMBE-SGE-2019 workshop

blobtools_manuscript

Data for the BlobTools manuscript

kinfin_manuscript

Data for the KinFin manuscript

snpgenie

Perl software for estimating evolutionary parameters from pooled next-generation sequencing SNP data

blocktools

bSFS-based analysis toolkit

GenomeBiology2016_globodera_rostochiensis

Scripts used in "The genome of the yellow potato cyst nematode, Globoderia rostochiensis, reveals insights into the bases of parasitism and virulence"

manuscripts

tardigrade

Scripts and relevant processed data files for Boothby et al 2015 and Koutsovoulos et al 2015 tardigrade genome papers

mackintosh2019

The determinants of genetic diversity in butterflies – Lewontin's paradox revisited

bioinformatic_tools

random tools

blastnbury

Perl script for performing remote BLAST searches, selecting manually best hits and storing the in CSV format

cactus

Official home of genome aligner based upon notion of Cactus graphs

chow2018

Data files associated with Chow et al., 2018

DataToolKit

General tools for genomics

dombadom

A website

drl.github.io

farrago

A collection of bioinformatic tools

GenePS

Gene positioning system

hoxpipe

a work in progress

mclean2017

Improving the annotation of the Heterorhabditis bacteriophora genome

nanorc

Improved syntax highlighting for GNU nano

pacbio-assembly-workflow

PacBio Assembly Workflow

PGA_course_2022_data

rbbh

syntenythyzer

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thesis

Supplementary material for the PhD thesis "On the evolution of effector gene families in potato cyst nematodes"