DPCscience

deep-learning-for-GS

scripts and examples

AlphaSimHlpR

Functions added to AlphaSimR to simplify simulating breeding schemes

benchmarking-gnns

Repository for benchmarking graph neural networks

blupADC

blupADC:An useful tool for animal and plant breeding

CD4ML-Scenarios

Repository with sample code and instructions for "Continuous Intelligence" and "Continuous Delivery for Machine Learning: CD4ML" workshops

EGP

EnvRtype

Provide tools for collecting environmental data from GIS-based platforms,enabling environmental characterization studies, providing environmental relatedness kinships and kernels for genomic prediction of reaction norms

EpiGP

Epistatic Relationship Matrix Based Genomic Prediction of Phenotypes

flow

View and Browse Code Using Flow Diagrams

GCA

Genetic connectedness analysis R package.

Genomic_prediction

GS_apple_texture

gt

Easily generate information-rich, publication-quality tables from R

Heritability

Heritability in plant breeding - R and SAS code examples

Learn-Amazon-SageMaker

Learn Amazon SageMaker

lfelipe-ferrao.github.io

My personal website

MegaLMM

R package for fitting high-dimensional multivariate linear mixed effect models

metan

Package for multi-environment trial analysis

nadiv

:exclamation: This is a read-only mirror of the CRAN R package repository. nadiv — (Non)Additive Genetic Relatedness Matrices. Homepage: https://github.com/matthewwolak/nadiv Report bugs for this package: https://github.com/matthewwolak/nadiv/issues

neubias_academy_biapy

NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter

OptimalDesign

OSGS

Script files for manuscript titled "Origin Specific Genomic Selection: a simple process to optimize the favourable contribution of parents to progeny"

pbsim

An R package of functions to perform breeding simulations.

plantcv

Plant image analysis using OpenCV

ribd

Computation of pedigree-based relatedness coefficients

S2MET_GSTrainingDesign

Scripts to replicate analysis of using environmental similarities when designing genomewide prediction training set.

SeqBreed

A python tool to evaluate genomic prediction in complex scenarios

SFSI

shantel-martinez.github.io

Superpower

Simulation-Based Power Analysis