DL0520

DMGI

Unsupervised Attributed Multiplex Network Embedding (AAAI 2020)

dssp

Application to assign secondary structure to proteins

APPLES

Allosteric Protein-protein interaction Pocket Likelihood Evaluation System

multilayer-brains

A pipeline for the construction and multilayer motif analysis of temporal fMRI brain networks

pymnet

The original library for analyzing multilayer networks.

multinetx

multiNetX is a python package for the manipulation and visualization of multilayer networks. It is build on NetworkX

deepDTnet

masif

MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.

EGFI

EGFI: Drug-Drug Interaction Extraction and Generation with Fusion of Enriched Entity and Sentence Information

RANEDDI

GMT

Official Code Repository for the paper "Accurate Learning of Graph Representations with Graph Multiset Pooling" (ICLR 2021)

HEBO

Bayesian optimisation & Reinforcement Learning library developped by Huawei Noah's Ark Lab

GLocalKD

Implementation of the paper Deep Graph-level Anomaly Detection by Glocal Knowledge Distillation(WSDM22)

alp-baselines

Baselines for anchor link prediction (including MNA, PALE, IONE, FINAL, FRUI-P, CROSSMNA, REGAL, HYDRA, STUL)

CrossMNA

MNE

Source Code for IJCAI 2018 paper "Scalable Multiplex Network Embedding"

OrthoNet

A general approach for multilayer network data clustering

NEMN

Network Embedding framework in Multiplex Networks

MGSSL

Official implementation of NeurIPS'21 paper"Motif-based Graph Self-Supervised Learning for Molecular Property Prediction"

ProTINA

NEDTP

Python-GCNMK

Predicting potential drug-drug interactions.

HpyerAttentionDTI

HyperAttentionDTI: improving drug–protein interaction prediction by sequence-based deep learning with attention mechanism. This repository contains the source code and the data.

NECARE

NEtwork-based CAncer gene RElationship prediciton

SiGraC

HPODNets

HPODNets: deep graph convolutional networks for predicting human protein-phenotype associations

seq_ppi

This is the repository for PIPR. This repository contains the source code and links to some datasets used in the ISMB/ECCB-2019 paper "Multifaceted Protein-Protein Interaction Prediction Based on Siamese Residual RCNN".

DPPI

A convolutional neural network to predict PPI interactions

InterpretablePIP

Interpretable protein-protein interaction prediction based on sparse gated sequence encoder

gcn

Implementation of Graph Convolutional Networks in TensorFlow