DBinary / Retinoblastoma_analysis

This repository contains all the codes currently used in the retinoblastoma analysis.

Chromatin and Gene Regulatory Dynamics of Optic Nerve Invasion in Retinoblastoma at Single-Cell Resolution

This repository contains all the code currently used in the study that in submitting: Yihan Z et al. Chromatin and Gene Regulatory Dynamics of Optic Nerve Invasion in Retinoblastoma at Single-Cell Resolution.

Data availability

The annotated data that we used in this study are available in the Figshare.

• The scRNA-seq data for retinoblastoma is stored in the following URL: https://figshare.com/articles/dataset/rna_anno_h5ad/22548397

• The scATAC-seq data for retinoblastoma is stored in the following URL: https://figshare.com/articles/dataset/rna_anno_h5ad/22548391

• The motif-counts-matrix data for retinoblastoma is stored in the following URL: https://figshare.com/articles/dataset/motif_anno_h5ad/22548388

• The annotated scRNA-seq data that we use to verify the reliability of the conclusion is stored in the following URL:https://figshare.com/articles/dataset/val_rna_anno/22548478

Code availability

• The codes in the main file are for main analysis

• The codes in the supplementary file are for supplement analysis