Beast code in Giters

CshlSiepelLab's repositories

phast

PHAST

Language:CNOASSERTION67 9 54

LINSIGHT

Language:C++BSD-2-Clause24 6 11

arg-selection

ARG-based inference of selection using deep learning

Language:Python16 3 3

argweaver

Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)

Language:C++MIT1300

argweaver-d-analysis

Scripts for Hubisz et al 2019 "Mapping gene flow between ancient hominins..."

Language:R800

RPHAST

RPHAST: Phylogenetic Analysis with Space/Time Models in R

Language:CNOASSERTION8 2 5

super-enhancer-code

Code for Nature Genetics correspondance, "Is a super-enhancer greater than the sum of its parts?" (2016).

Language:R700

superEnhancerModelR

Super-enhancer modeling package based off analysis from Dukler at al. (2017)

Language:R500

bird_capuchino_analysis

Language:R400

bat_genome_analysis

Language:Python300

DENR

Select the most actively transcribed transcript model using PRO-seq

Language:RMIT3 13 1

LASSIE

Language:PythonBSD-2-Clause2 30

nascentRNASim

A package for empirical simulation of nascent RNA data

Language:RMIT2 20

extraINSIGHT

A model for quantifying rare variant depletion by pooling data across a set of genomic regions

Language:Python1 40

FitCons2

Language:C++BSD-2-Clause1 30

tuSelecter

Language:R1 60

UniMod

Language:RMIT1 30

SimPol

Language:HTMLMIT020

ACE

ACE: Analysis of CRISPR Essentiality in R

Language:RMIT03 2