CreRecombinase

ldmap

Manipulate and Interpolate Genetic Map Data

arrow

Apache Arrow is a multi-language toolbox for accelerated data interchange and in-memory processing

batchtools

Tools for computation on batch systems

bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

cachem

Key-value caches for R

cgranges

A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)

cpp11

cpp11 helps you to interact with R objects using C++ code.

datasync

A wrapper utility for rclone to allow for yaml based config management of data transfers you intend to reuse.

duckdb-web

DuckDB-Web - Source code of duckdb.org

GeneGPT

Code and data for GeneGPT.

gffutils

GFF and GTF file manipulation and interconversion (duckdb)

granges

htslib

C library for high-throughput sequencing data formats

ieugwasr

R interface to the IEU GWAS database API

latent-scope

A scientific instrument for investigating latent spaces

Leeds-Flipper-Zero-Applications

liftover

liftover for python, made fast with cython

MR-APSS

Mendelian Randomization accounting for Pleiotropy and Sample Structure using genome-wide summary statistics

nba-monte-carlo

Monte Carlo simulation of the NBA season, leveraging meltano, dbt, duckdb and superset

noodles

Bioinformatics I/O libraries in Rust

officer

:cop: officer: office documents from R

pybcftools

Manipulate bcf/vcf files from python

r-base-shortcuts

⚡ Base R shortcuts: A collection of lesser-known but powerful idioms and coding patterns for writing concise and fast R code

reticulate

R Interface to Python

score

Tools to work with GWAS-VCF summary statistics files

spack

A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

spackenv

spack environment interface for Emacs

vilma

polygenic scores using variational inference on GWAS summary statistics from multiple cohorts

vilmor

Vilmor :vulcan_salute: - Recipe generator for Spack

vroom

Fast reading of delimited files