Craig Marsh (aka Cyril)'s repositories
SableFishResearch
A repository to host a Gitbook that documents my Alaskan sablefish research
SpatialSablefishAssessment
A R package that contains TMB stock assessment models and auxiliary functions. Initially it was built for Sablefish, but could be fit to any stock that exhibits sexual dimorphism, has two fishing fleets and generalized number of spatial regions.
LogisticNormalLL
A repo that looks at implementing the logistic normal negative log likelihood for composition data
adcomp
AD computation with Template Model Builder (TMB)
BookDownExample
Illustrate how to deploy a bookdown on Github pages
casal2tostan
An rlibrary that I will convert csl2 files to STAN models for the purpose of research
Craig44.github.io
A webpage to play around with
stockassessmenthelper
An R library with useful functions for my fisheries work
Projects
For my personal work and interests
r4Casal2
R package for summarising Casal2 models
spict
Surplus Production in Continuous-Time
SPM
Spatial Population Model
StartingConditionSimulation
A simple simulation to investigate the starting condition assumption for age-structured stock assessment models and its effect on reference points
systematicsurvey
Simple R package that has population estimators for two-dimensional systematic surveys.
UsingStancpp
A little stand alone repo for testing how to use Stan in a C++ standalone exe