Cpapa97 / minnie-config

Synced universal configuration for working with the `microns_minnie65_%` schemas with external and their attribute adapters.

minnie-config

Synced universal configuration for working with the microns_minnie65_% schemas with external and their attribute adapters.

Installation

pip3 install git+https://github.com/cajal/minnie-config.git

Command Line Interface (CLI)

This is only used for mounting the required dj-stor01 (currently windows only) which for example will mount the network drive to the Z drive letter on windows while the -s option makes it persistent.

minfig -s --drive Z 

While this command

minfig -m --drive Z

will unmount it.

Another way of mounting without mapping to a drive letter on windows is

minfig -s

however this will also require the drive to be absent, like this

minfig -m

to unmount it and won't be visible in file explorer. You can still view the mapped drives with

net use

if necessary.

There are more options like including the username or password on command line, and these option descriptions are available of course with

minfig -h

Usage

Before initializing the schema or a virtual module of the schema

import minfig
from minfig.adapters import * # Required for the adapters to be used with locally defined tables

minfig.configure_minnie()

or

from minfig import * # This will also import the attribute adapters into the namespace

minfig.configure_minnie()

To create a virtual schema with the proper attribute adapters

import minfig

minnie = minfig.configure_minnie(return_virtual_module=True)

or a more manual version

import datajoint as dj
from minfig import adapter_objects # included with wildcard imports

minnie = dj.create_virtual_module('minnie', 'microns_minnie65_01', add_objects=adapter_objects)