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ConesaLab - Genomics of gene expression's repositories

SQANTI3

Tool for the Quality Control of Long-Read Defined Transcriptomes

Language:HTMLGPL-3.0193 10 274

MultiPower

Statistical power studies for multi-omics experiments.

Language:R29 8 6

tappAS

This repository contains the source code for the tappAS application. See README for details.

Language:JavaGPL-3.016 4 56

acorde

Isoform co-usage networks from single-cell RNA-seq data

Language:HTMLGPL-3.014 2 3

SQANTI

Language:PythonMIT10 5 2

TCR_nextflow

Language:Nextflow10 3 1

MOSim

Bulk and single-cell Multi-Omics ground truth Simulator in R

Language:R703

MDM

Workflow and package for network approach to study the role of microbial dark matter (MDM)

Language:RNOASSERTION6 1 1

Padhoc

Text mining tool for biological pathways reconstruction

Language:Python6 40

SQANTI-SIM

A simulator of controlled transcript novelty for lrRNA-seq benchmark

Language:HTMLGPL-3.0603

IsoAnnot

Language:Python5 10

Discover regulatory relationships for multi-omics data using regression models.

Language:R5 40

MultiBaC

Single and multiomic batch effect correction

Language:R5 4 6

paintomics4

Language:JavaScriptGPL-3.05 2 1

MirCure

microRNA quality control, filter, and curation.

Language:RGPL-3.04 20

RColorConesa

Conesa Palette for R

Language:RNOASSERTION4 10

Coxmos

Survival Analyses for High Dimensional Data

Language:HTMLCC-BY-4.0200

NOISeq

NOISeq package

2 1 2

MAMBA

Language:MATLABGPL-2.0100

MultiMip6

1 20

TEDDY_Multi-Omics_Integration

Language:R1 30

beanTFBSs

Language:R010

DeCovid

Transcriptomics analysis for COVID-19 Disease Map genes.

Language:R020

MHE_Multi-Omics_Integration

MHE: Mimimal Hepatic Encephalopathy

Language:R010

Perspective_Multi-Omics_Integration

Repository containing supplementary code for Tarazona et al. 2021, Nat. Comp. Sci.

Language:HTML020