Computational Omics and Systems Biology Group

spectrum_similarity

Scoring functions to compare MS/MS spectra

pladipus

Platform for Distributed Proteomics Software

xilmass

An algorithm to identify cross-linked peptides

CellMojo

dbtoolkit

Manipulating fasta sequence databases

ReSpinOnline

Online public viewer for ReSpin Results

search-all-assess-subset

An implementation of the Search All, Asses Subset strategy for FDR estimation in shotgun proteomics.

spectrawl

A rich client tool used for browsing through spectra looking for specific mass differences.

compomics-crowd

Library that allows for windows users to contribute to science through donating cpu cycles behind a screensaver

cell-motility

Enabling the analysis of cell motility paths over time.

cluster-data-generation

Filter and export spectrum from PRIDE Archive

commons

compomics-ensh

Java hibernate model for ensembl.

compomics-sigpep

Predicting peptide signatures for targeted proteomics.

COSS-Archive-

CompOmics Spectral Similarity Search Tool

icelogoserver

The server edition of the iceLogo tool.

ipython-notebook-server

Mini tornado server to provide multiple iPython notebook kernels from a single machine.

jwrapper-pepnovo

LFQ_galaxy_p

Enable protein summarisation and quantitation in Galaxy-P

Lorikeet_spectrum_viewer

Python script to annotate MS2 spectra from MHGF file.

MAPPI-DAT

analysis and data management tool for high-throughput protein-protein interaction data generated from microarray-MAPPIT system

mslimsdatfileextractor

simple jar for extracting dat files from mslims projects

oxPTMScanner

PeptideMapper-Benchmark

Benchmark dataset for PeptideMapper paper.

ProteinAssociationPair

psi_io

search-all-assess-subset-paper

toppr

The Online Protein Processing Resource.

visualisationtool

visualisation tool for proteins

xltools