Cold7's repositories
human_reference_net
a general regulatory network for human based on regnetwork dorothea and trrust
mouse_reference_net
the merged network of regnetwork, dorothea and trrust (only high quality)
a.thaliana
repository for a.thaliana postdoctoral project
AUPR_network
usage: Script to compute the Area Under Precision-Recall curve based in a reference and a GENIE3 inferred network.
binarizeDF
a simple function for binarize a python df
test
learning git/github
boostrap_from_df
make subDF for boostrapping from a single dataframe (using tsv file)
Cold7
Config files for my GitHub profile.
datascience
A reporsitory to sumarize datascience techniques
FRiP
Compute FRiP score for ATAC and ChIP seq experiments
gene_search_in_pubmed
a simple script that perform a searching of genes of interest in pubmed
get_adapters
simple python script to detect adapters from fastqc html reports and report it to save as a fasta file
gtf2dict
a simple python3 function that take the gtf file name and return a protein coding gene dictionary
KNN_tutorial
tutorial del algoritmo KNN para estudiantes del liceo comercial
mean_roc_pr
scripts to generate mean roc and pr curves for a dataset
obo2graph
a simple notebook to parse OBO file (for GO terms) into a graph.
tesis_doctoral
repositorio para los scripts desarrollados durante la tesis doctoral
translateFromEnsembl
simple script to translate between geneID/transcriptID/genesymbol
TSS_mouse_mm10
A 3 columns tss file for mm10 genome
whisper
Robust Speech Recognition via Large-Scale Weak Supervision