Cold7's repositories

obo2graph

a simple notebook to parse OBO file (for GO terms) into a graph.

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Cold7

Config files for my GitHub profile.

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test

learning git/github

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whisper

Robust Speech Recognition via Large-Scale Weak Supervision

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Jindex

a simple script to compute Jaccard index between two networks (in gml format)

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KNN_tutorial

tutorial del algoritmo KNN para estudiantes del liceo comercial

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gtf2dict

a simple python3 function that take the gtf file name and return a protein coding gene dictionary

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boostrap_from_df

make subDF for boostrapping from a single dataframe (using tsv file)

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FRiP

Compute FRiP score for ATAC and ChIP seq experiments

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AUPR_network

usage: Script to compute the Area Under Precision-Recall curve based in a reference and a GENIE3 inferred network.

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binarizeDF

a simple function for binarize a python df

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RIP-MD3

RIP-MD to be used under python3

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TSS_mouse_mm10

A 3 columns tss file for mm10 genome

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mouse_reference_net

the merged network of regnetwork, dorothea and trrust (only high quality)

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human_reference_net

a general regulatory network for human based on regnetwork dorothea and trrust

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datascience

A reporsitory to sumarize datascience techniques

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makeNet

makeNet script to filter human/mouse regnetwork due a TF list file

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translateFromEnsembl

simple script to translate between geneID/transcriptID/genesymbol

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get_adapters

simple python script to detect adapters from fastqc html reports and report it to save as a fasta file

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a.thaliana

repository for a.thaliana postdoctoral project

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split_chr

A simple script to separate a whole genome into chrs

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tesis_doctoral

repositorio para los scripts desarrollados durante la tesis doctoral

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gene_search_in_pubmed

a simple script that perform a searching of genes of interest in pubmed

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mean_roc_pr

scripts to generate mean roc and pr curves for a dataset

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