Cloud-SPAN

CloudSPAN-handbook

CloudSPAN Handbook

metatranscriptomics

.github

00genomics

Genomics Course Introduction

01genomics

Project management for cloud genomics

02genomics

Data preparation and organisation

03genomics

Assessing read quality then trimming and filtering reads

04genomics

Finding sequence variants

cloud-admin-guide-1-setting-work-environments

Cloud Admin Guide course - lesson Setting Work Environments

cloud-admin-guide-v2q

cloud-span-quarto-site

metagenomics01-qc-assembly

Metagenomics QC and Assembly lesson

nerc-metagenomics-v2q

NERC Metagenomics (Quarto-based Version 2 + Bash automation)

nerc-metagenomics01-file-directories

NERC Metagenomics File Directories

nerc-metagenomics02-command-line

NERC Metagenomics Command Line

nerc-metagenomics05-binning

NERC Metagenomics Binning

aws-instances

Scripts for managing multiple AWS instances and some data examples: gc_run01_data and gc_run02_data

cloud-admin-guide-0-overview

Cloud Admin Guide course overview

cloud-admin-guide-2-managing-aws-instances

Cloud Admin Guide course - lesson Managing AWS Instances

cloud-span-graphics

core-r

create-aws-instance-1-open-account

Lesson 1 Open your AWS account.

create-aws-instance-2-manage-instance

Lesson 2 Manage your AWS instance

experimental_design00-overview

experimental_design01-principles

experimental_design02-case-study

nerc-metagenomics00-overview

NERC Metagenomics Overview

nerc-metagenomics03-qc-assembly

NERC Metagenomics QC Assembly

nerc-metagenomics04-polishing

NERC Metagenomics Polishing

nerc-metagenomics06-taxonomic-anno

NERC Metagenomics Taxonomic Annotations