Cannot download more than 78% / 100MB of TCGA_ChiTaRS_combined_fusion_ORF_analyzed_gencode_h19v19.txt
valleema opened this issue · comments
Hello,
I tried to automatically download references through nf-core/rnafusion, the download get stuck at 78% or around 100MB.
Then, I tried manually to download, as proposed here : https://matq007.github.io/fusion-report/#/download?id=manual-download
The line:
wget --no-check-certificate https://ccsm.uth.edu/FusionGDB/tables/TCGA_ChiTaRS_combined_fusion_ORF_analyzed_gencode_h19v19.txt -O TCGA_ChiTaRS_combined_fusion_ORF_analyzed_gencode_h19v19.txt
Gets stuck at 78% or ~ 100MB (tried on different machines, local and distant to me).
Running with -c
helps completing the download, after killing by CTRL-C
the previous wget
process:
wget -c --no-check-certificate https://ccsm.uth.edu/FusionGDB/tables/TCGA_ChiTaRS_combined_fusion_ORF_analyzed_gencode_h19v19.txt -O TCGA_ChiTaRS_combined_fusion_ORF_analyzed_gencode_h19v19.txt
But even if I have found a workaround, I am stuck, because in the help, you say;
# Create database and import the data
...but I don't know how do you do it.
I am sorry, but it has just worked as intended, without getting stuck... I have no idea why!!