ClementCaporal

pydantic-ome-ngff

Pydantic models for OME-NGFF

pytorch-zarr-loader

coLoc

A Board Game to teach co-localization analysis

pytorch_connectomics

PyTorch Connectomics: segmentation toolbox for EM connectomics

napari-fast4dreg

dask empowered fast4dreg

human-eval-bia

Benchmarking Large Language Models for Bio-Image Analysis Code Generation

napari-nD-annotator

DeepD3

pyrepo-copier

Template for creating a new python repository

BIO302

Here you can find all additional code and data for the project

magicgui

build GUIs from type annotations

napari-skimage

A minimal dependency napari plugin giving access to scikit-image functions

numpydantic

Type and shape validation and serialization for numpy arrays in pydantic models

CellSeg3D

A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks

micro-sam

Segment Anything for Microscopy

napari-brainbow-diagnose

Diagnoze brainbow image using napari

bioio

Image reading, metadata management, and image writing for Microscopy images in Python

zulip

Zulip server and web application. Open-source team chat that helps teams stay productive and focused.

Scientific-Inkscape

Scientific Inkscape: Inkscape extensions for figure resizing and editing

ratpstatus

Page de suivi et d'historisation de l'état du trafic des Ⓜ️ Métros, 🚆 RER / Transiliens et 🚈 Tramways d'Île de France

NeubiasPasteur2023_AdvancedCellPose

tutorial for running CellPose advanced functions

dask-image

Distributed image processing

mcm-cryoet

Mean curvature motion for cryo-electron tomograms

pyclesperanto

GPU-accelerated Image Processing library using OpenCL

Awesome-Zarr

🎀 Awesome Zarr resources

rtree

Rtree: spatial index for Python GIS

iterseg

napari plugin for iteratively improving 3D instance segmentation of cells (u-net x watershed)

napari-biom3d

biom3d

Easy Volumetric Segmentation with Deep Learning

MetricsReloaded