UCR Citrus ECDRE HLB project's repositories
Amplicon_PreProcess
Sample Sheets for Amplicon Runs
Fusarium_OrthoCompare
Process Orthogroups
Amplicon_Year0-1_demo
demonstration of amptk + phyloseq plots for Years 0 & 1 data
Amplicon_Years_0_1
Analysis of Years 0-1 of the Citrus project
Language:ShellMIT000
Citrus-HLB-Micro.github.io
CAP Citrus Project for HLB
Fusarium_Chrom_Correspondance
Correspondance of Fusarium isolate chromosomes
Genome_Fungal_Culture
Genome assembly and annotation of fungal genomes from Citrus microbiome culture collection
Metagenome_Citrus_Hi3C
Citrus tissue microbiome/metagenome with Phase Hi3C
Metagenome_Citrus_Pilot_2022_12
Pilot Metagenome data
Metagenome_Xu_NatCom_2018
Metagenome analysis of Xu et al NatCom 2018 data for extracting MAGs
PIlot_Extraction
Pilot Extraction technology