Chungsoo's repositories
cehr-bert
CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks
ChungsooKim.github.io
Chungsoo's Github Pages for academic personal websites, forked from mmistakes/minimal-mistakes
CohortGeneratorModule
[Under development] A module wrapper around the CohortGenerator package
CohortMethod
An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.
Cyclops
Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.
datasharing
The Leek group guide to data sharing
DeepPatientLevelPrediction
An R package for performing patient level prediction using deep learning in an observational database in the OMOP Common Data Model.
DeepPatientLevelPredictionModule
A module for deep PLP model development
interpretable-ml-book
Book about interpretable machine learning
Med-BERT
Med-BERT, contextualized embedding model for structured EHR data
Metis
Under the development, do not use
PatientLevelPrediction
An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
PatientLevelPredictionModule
[Under development] A module wrapper around the PatientLevelPrediction package
SkeletonPredictionStudy
A skeleton package to use as a template for studies developing prediction models