ChuHan89

FedDBL

CKD-TransBTS

HIPT

Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)

PDBL

PDBL: Improving Histopathological Tissue Classification with Plug-and-Play Pyramidal Deep-Broad Learning

WSSS-Tissue

APE

[ECCV 2020] Attract, Perturb, and Explore: Learning a Feature Alignment Network for Semi-supervised Domain Adaptation

publication-figures

Scripts capable of re-creating figures from Van Valen Lab publications

intro-to-deepcell

An introduction to deepcell and deep learning

QuickAnnotator

An open-source digital pathology based rapid image annotation tool

SSL_CR_Histo

Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medical Image Analysis (MedIA) Journal, Oct, 2021.

DigiPathoImageAnalysis

List of academic institutes/companies working on computer-based digital pathology image analysis

Triple_U-net

The code of Triple U-net: Hematoxylin-aware Nuclei Segmentation with Progressive Dense Feature Aggregation.

NuClick

Interactive Segmentation of Nucleus

CryoNuSeg

This repository includes the codes and descriptions to create a fully annotated dataset of nuclei from cryosectioned histological samples.

PORPOISE

Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell

HCC_Prognostic

Exploring prognostic indicators in pathological images of hepatocellular carcinoma based on deep learning

HistomicsTK

A Python toolkit for pathology image analysis algorithms.

BCSS

Use this to download all elements of the BCSS dataset described in: Amgad M, Elfandy H, ..., Gutman DA, Cooper LAD. Structured crowdsourcing enables convolutional segmentation of histology images. Bioinformatics. 2019. doi: 10.1093/bioinformatics/btz083

hover_net

Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.

NucleiSegmentation

cGAN-based Multi Organ Nuclei Segmentation

awesome-cell-detection-segmentation

nucleus/cell and histopathology image classification,detection,segmentation

cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

Medical_DS

MedicalChatbot

Medical-domain Dialogue System for Diseases Identification

Autorec

Autorec (Autoencoders Meet Collaborative Filtering)

ai_projects

AI projects

CellProfiler

An open-source application for biological image analysis

Detectron

FAIR's research platform for object detection research, implementing popular algorithms like Mask R-CNN and RetinaNet.

pokemongo-webspoof

👾 Play Pokémon Go from your Mac

CmCode

Ming-Ming Cheng's open source projects