ChristopherWilks

megadepth

BigWig and BAM utilities

snaptron

fast webservices based query tool for large sets of genomic features

snaptron-experiments

contains code and scripts to re-create analysis function experiments from the Snaptron paper

ncbi_indexing

gffcompare

classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF

monorail_unifier_galaxy

aggregator tool for multiple monorail pump outputs

snappening

bamcount_galaxy

bioconda-recipes

Conda recipes for the bioconda channel.

bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

bwtool

A tool for bigWig files.

ChristopherWilks.github.io

public blog

gclib

GCLib - Genomic C(++) library of reusable code for bioinformatics projects

hisat

Fast spliced aligner with low memory requirements

jhu-thesis-template

JHU Thesis Template

juncr

ld_preload_tutorial

Overview of how to use LD_PRELOAD using ZLIB wrapper for ZSTD compression

libbf

:dart: Bloom filters for C++11

Lighter

Fast and memory-efficient sequencing error corrector

monorail_dm_galaxy

Index DataManager for Monorail pipeline

monorail_galaxy

mosdepth

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

open-data-registry

A registry of publicly available datasets on AWS

Rcorrector

Error correction for Illumina RNA-seq reads

SciScript-Python

Python libraries for SciScript, Jupyter Notebooks

sliceit

python client for web services offering segmental access to genomics sequence/alignments.

SnaptronUI

A webapp frontend to query exon-exon junction data via Snaptron

squeakr

Squeakr: An Exact and Approximate k -mer Counting System

torch

zstd

Zstandard - Fast real-time compression algorithm