Chris1221

yamldoc

Dependency-free YAML documentation engine.

epic_rpg_converter

A Discord bot for converting between resources in Epic RPG (another Discord bot).

ggsource

Easily open the file used to generate an exported PDF from R / ggplot2.

IMa3_Input

A Snakemake pipeline for creating IMa3 input from a VCF file via the Popgen Pipeline Platform.

lanceotron

Command-line interface to the LanceOTron deep learning peak caller

genomic_interval_pipeline

Pre-processing of genomic intervals for deep learning.

advent_of_code_2022

Solutions for the advent of code 2022

advent_of_code_2023

Solutions for the advent of code 2023

allerID

A goldi-based shiny app to identify allergens.

blda

Weighted latent dirichlet allocation for bulk ATAC-seq

Chris1221

chris1221.github.io

Personal website.

cisTopic

cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data

cookbook

Flask cookbook application automatically deployed to Github pages

crafting_interpreters

Working through Robert Nystrom's Crafting Interpreters

deepStab

Deep learning prediction of cell-type specific RNA stability.

dphil_thesis

DPhil thesis completed at the University of Oxford

eghop_270720

Talk given at the EGHOP summer journal club

ldsc

LD Score Regression (LDSC)

minimal_snakemake_report

An example of snakemake's reporting functionality.

particles

polyfun

PolyFun (POLYgenic FUNctionally-informed fine-mapping)

regenie

regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.

scJaccard

Pure rust computation of the continuous Jaccard index at a single cell level

SCOPE

Scalable population structure inference

smcsmc

Demographic inference from whole genomes

stdpopsim

A library of standard simulation models for msprime

tll

A tiny little language

undergraduate_thesis

Optimal polygenic prediction for coronary artery disease

wgba

Which genome build again?