Choupan

Retina_OCT_dcm2nii

This repository converts retinal OCT data from dicom format to nifti, and adjusts the orientations.

2019-Multi-target-feature-selection

Matlab code for the methods presented in the paper "Multi-target feature selection through output space clustering"

abcd-hcp-pipeline

bids application for processing functional MRI data, robust to scanner, acquisition and age variability.

awesome-ai-ml-dl

Awesome Artificial Intelligence, Machine Learning and Deep Learning as we learn it. Study notes and a curated list of awesome resources of such topics.

ciftify

The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets

ComBatHarmonization

Harmonization of multi-site imaging data with ComBat

drawNemenyi

Publication quality figure for Nemenyi post-hoc test for the Friedman's test

fieldtrip

The MATLAB toolbox for MEG and EEG analysis

fmriprep

fMRIprep is a functional magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.

hcp-utils

Utilities to use HCP and HCP-like data with nilearn and other Python tools

HCPpipelines

intersubj_rsa

An exploration of how to use inter-subject representational similarity analysis (is-RSA) to study individual differences in brain activity during naturalistic neuroimaging.

ml-videos

A collection of video resources for machine learning

MRtrix_Analysis_Scripts

Scripts for analyzing diffusion data with MRtrix

ScanningTheHorizon

Code and data for "Scanning the Horizon..." review in Nature Reviews Neuroscience

SynthSeg

Contrast-agnostic segmentation of MRI scans

TF2.4_IVIM-MRI_CodeCollection

OSIPI TF2.4: IVIM MRI code collection