ChiZhou-SITI

iTuNES-dev

identification of TUmor NEantigens pipeline

PREP

Prioritizing of RNA Editing-based Peptides

sepath_tool_UEA

SEPATH template pipelines optimised for UEA high performance computing cluster

xiSPEC_website

biblatex-gb7714-2015

A biblatex implementation of the GB/T7714-2015 bibliography style || GB/T 7714-2015 参考文献著录和标注的biblatex样式包

CPInfer

A pipeline for inferring mutation clonal population structure from NGS data

DeepPATH

Classification of Lung cancer slide images using deep-learning

diamond

Accelerated BLAST compatible local sequence aligner.

docker_cmd

EnsemblToHGNC

This script takes in a tab-separated file containing at least one column of Ensembl IDs and a string indicating the header for this column, and outputs a tab-separated file identical to the input file except that it has an additional column containing mapped HGNC gene symbols for each row.

Grokking-Deep-Learning

this repository accompanies my forthcoming book "Grokking Deep Learning"

hiveplot

Hive Plots in using Python & matplotlib!

ICC_ImmunGenomics

ims_gene_signature

Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma

Keras-GAN

Keras implementations of Generative Adversarial Networks.

LDA

Topic modeling with latent Dirichlet allocation using variational inference and Gibbs sampling

MASCOT-1

models

Models and examples built with TensorFlow

msisensor

microsatellite instability detection using tumor only or paired tumor-normal data

percolator

Semi-supervised learning for peptide identification from shotgun proteomics datasets

pyclone-vi

Fast method for inferring cancer clonal population structure from SNV data.

PyCloneTSVGeneration_FACETS_or_TITAN

Combine snv maf, indel maf, and titan allelic copy number calls, from either FACETS or TITAN, into the .tsv input PyClone requires.

python-ternary

:small_red_triangle: Ternary plotting library for python with matplotlib

RNAEditor

Sarek

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

SCneoantigen

SPRINT

SNP-free RNA editing Identification Toolkit

tcga

Microbial analysis in TCGA data

TongjiThesis

同济大学硕博士论文LaTeX模板

zUMIs

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs