Lin Cheng's starred repositories
GenomeDelta
Library-free horizontal transfer detection, with a focus on transposable element invasions
Assemblytics
Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.
genomics_general
General tools for genomic analyses.
Potato_C88
Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning
assembly-annotation-pipeline
Plant genome assembly and annotation pipeline using snakemake