Charlesyip2016's repositories
2020_Wilk_COVID
Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVID-19"
BioNERO
Easy and comprehensive biological network reconstruction and analysis
cellhint
A tool for semi-automatic cell type harmonization and integration
cellpose
a generalist algorithm for cellular segmentation
fastMRI
A large-scale dataset of both raw MRI measurements and clinical MRI images.
FlexDotPlot
R package for Flexible dot plots
Genes2Genes
Aligning transcriptomic trajectories of single-cell reference and query systems
machinelearning
My blogs and code for machine learning. http://cnblogs.com/pinard
MachineShop
MachineShop: R package of models and tools for machine learning
SCEPTRE
This repository contains code for the paper "Conditional resampling improves calibration and sensitivity in single cell CRISPR screen analysis" by Katsevich et al. 2020.
SComatic
A tool for detecting somatic variants in single cell data
SCP
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
scPerturb
scPerturb: A resource and a python/R tool for single-cell perturbation data
scrnapip
A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis
survivalmodels
Implementations of survival models in R