Carson J Miller's repositories
HoffLab_WGS
Snakemake pipeline for WGS analysis
pathogenidentifier
A bioinformatics pipeline for identifying pathogens in (meta)-genomic sequences
biobakerymgx
Read-preprocessing, taxonomic classification, functional classification, strain analysis, and pangenome analysis using bioBakery tools
Language:NextflowMIT000
bactopia
A flexible pipeline for complete analysis of bacterial genomes
MIT000
caganalyzer
A pipeline for identifying and analyzing co-abundant gene clusters (CAGs) in microbiome studies
Language:NextflowMIT000
MIT000
mag
Assembly and binning of metagenomes
Language:NextflowMIT000
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
Language:NextflowMIT000
Language:NextflowMIT000
readsimulator
A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
Language:NextflowMIT000
Language:NextflowMIT000
website
Code and files for the main nf-core website.
Language:AstroMIT000