Joanna Malukiewicz's repositories
AAAGs_2018
Course Materials for AAAGs 2018 Workshop
angsd-wrapper
Utilities for analyzing next generation sequencing data.
Callithrix_mtDNA
shell scripts for obtaining mitochondrial genome assembles from whole genome sequences
callithrix_microbiome
code to accompany https://doi.org/10.1101/708255
conda_on_the_cluster
A brief tutorial introducing learners to the Conda environment and package management system.
Copenhagen
Analysis of genotyping and next-generation sequencing data in medical and population genetics
freebayes
Bayesian haplotype-based genetic polymorphism discovery and genotyping.
KewHybSeqWorkshop
Tutorials and materials for planning a HybSeq project, processing sequences, and conducting phylogenomic analyses.
local_ancestry_inference_with_ELAI
Pipeline for local ancestry inference - in progress...
ngsPopGen
Population genetics analyses from NGS data
Slate-and-Simple-Jekyll-Theme
A sleek Jekyll theme for blogs with clean typography and post featured images.
squirrel-project
Scripts for "squirrel project".