Zhaohui Cai's repositories
RNA-seq-analysis
RNAseq analysis notes from Ming Tang
anvio
An analysis and visualization platform for 'omics data
Awesome-Bioinformatics-CN
生物信息学软件，资源和工具库的精选列表
awesome-cheatsheets
超级速查表 - 编程语言、框架和开发工具的速查表，单个文件包含一切你需要知道的东西 :zap:
awesome-phages
A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.
Bacterial_Genetics_Course_Packet
Course packets for Bacterial Genetics and Physiology. Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
BactSeq
A nextflow pipeline for performing bacterial RNA-Seq data analysis.
BEAST
Bacterial Epigenomics Analysis SuiTe
biofx_python
Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)
bionitio
Demonstrating best practices for bioinformatics command line tools
DecompPipeline
Large automated pipeline for running the MeDeCom
EasyStat
EasyStat
Managing_Your_Biological_Data_with_Python_3
<<Managing Your Biological Data with Python>> wirtten in Python 3
Microbiome-Analysis-Using-R
Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
MicrobiomeStatPlot
Interpretation and visualization of microbiome charts
RNAseq-workflow
A repository for setting up a RNAseq workflow
simple-codon-optimizer
Simple Python program to perform codon optimization or heterology calculations.
stat_rethinking_2023
Statistical Rethinking Course for Jan-Mar 2023
Tools-Microbiome-Analysis
A list of R environment based tools for marker gene microbiome data exploration, statistical analysis and visualization
Unicycler
hybrid assembly pipeline for bacterial genomes