CU-DBMI-Peds / phoenix_application_note

phoenix: An R package and Python module for calculating the Phoenix Pediatric Sepsis Score and Criteria

The source code needed to build the manuscript.

Cite the article:

Peter E DeWitt, Seth Russell, Margaret N Rebull, L Nelson Sanchez-Pinto, Tellen D Bennett, phoenix: an R package and Python module for calculating the Phoenix pediatric sepsis score and criteria, JAMIA Open, Volume 7, Issue 3, October 2024, ooae066, https://doi.org/10.1093/jamiaopen/ooae066

The files, and history, provided in this repository is limited to what is needed for the published version only.

How to build the documents

• System dependencies:
  • quarto
  • R
  • GNU make
  • latexmk
  • latexdiff

The application note and supplemental file can be built by calling

make

This will check for needed R packages (see setup.R) and build the appliation note and supplemental file.