CORDEA / extract-sequences

Extract from sequences by python

The repository contains a program for extracting a specific area specified by the file from multiple chromosomal sequence.

Features

• supports multi-core processing.

Use library

• xlwt (Not required)

Version (recommended)

• python 2.7.6
• xlwt 0.7.5

Change Log

• 0.1.1

  • Add extension and strand options.
    • extension - Extend the specified area. (ex. 200) [default: 0]
    • strand - Do not carry out reverse complement when this option is specified.
  • If the strand is negative, run the Reverse Complement by default.

• 0.1.3

  • Add extension and strand options.
    • silent - Reduce the print statement when this option is specified.
  • Fixed the bug in linkFileCreate function.

• 0.1.5

  • Add extension and concat options.
    • concat - Output the sequences in a line when this option is specified.