CBroz1 / workflow-visual-stimulus

Example DataJoint workflow of `element-visual-stimulus` - NIH U24

DataJoint Workflow - Visual Stimulus

Workflow for visual stimuli, including gratings, launched via Psychtoolbox.

A complete workflow can be built using the DataJoint Elements.

• element-lab
• element-animal
• element-session

This repository provides demonstrations for:

1. Set up a workflow using DataJoint Elements (see workflow_visual_stimulus/pipeline.py)
2. Displaying gratings.

See the Element Visual Stimulus description for the background information and development timeline. For more information on the DataJoint Elements project, please visit https://elements.datajoint.org. This work is supported by the National Institutes of Health.

Workflow architecture

Installation instructions

The installation instructions can be found at the DataJoint Elements documentation.

Interacting with the DataJoint workflow

Please refer to the workflow-specific Jupyter notebooks for an in-depth explanation of how to run the workflow.

Citation

If your work uses DataJoint and DataJoint Elements, please cite the respective Research Resource Identifiers (RRIDs) and manuscripts.

• DataJoint for Python or MATLAB

  • Yatsenko D, Reimer J, Ecker AS, Walker EY, Sinz F, Berens P, Hoenselaar A, Cotton RJ, Siapas AS, Tolias AS. DataJoint: managing big scientific data using MATLAB or Python. bioRxiv. 2015 Jan 1:031658. doi: https://doi.org/10.1101/031658

  • DataJoint (RRID:SCR_014543) - DataJoint for <Select Python or MATLAB> (version <Enter version number>)

• DataJoint Elements

  • Yatsenko D, Nguyen T, Shen S, Gunalan K, Turner CA, Guzman R, Sasaki M, Sitonic D, Reimer J, Walker EY, Tolias AS. DataJoint Elements: Data Workflows for Neurophysiology. bioRxiv. 2021 Jan 1. doi: https://doi.org/10.1101/2021.03.30.437358

  • DataJoint Elements (RRID:SCR_021894) - Element Array Electrophysiology (version <Enter version number>)