This repository includes the ongoing efforts in production of useful codes to facilitate the manual curation of domain chopping. Check our wiki page if you never heard of DomChop.
(UPDATE: 2017-08-04) The doped_CATH will be migrating to a separate repo called django_CATH
, to allow for easier management and greater portability.
(UPDATED!!! 2017-07-14) If you are a Domchop curator. Please find the amazing_entries
page on wiki
tab. Please also document interesting structures into pdbs/
.
- Make sure you are on nDOPE branch before you test anything. (Obsolete,
nDOPE
already merged intomaster
)
git fetch nDOPE
git checkout nDOPE
You should have modeller installed and configured as a pre-requisite.
You should have modeller/bin on your $PATH variable. To set this temporarily, run
export PATH="$PATH:/path-to-modeller/bin/"
source modpy.sh
For example, if you installed Modeller to "/home/linux/modeller", then run:
export PATH="$PATH:/home/linux/modeller/bin/"
source modpy.sh
You can add these two commands into ~/.bashrc
, so that it is automatically set next time you start a new bash shell.
Alternatively, you can simply issue a condensed one-liner.
source /home/linux/modeller/bin/modpy.sh
Please test the Modeller installation with:
chmod +x tests/verify_modeller.sh
tests/verify_modeller.sh
Please run tests with
chmod +x run_tests.sh # To make the script executable
./run_tests.sh ## To run the tests
It should take ~10s to run all the tests.