CAMI-challenge

CAMISIM

CAMISIM: Simulating metagenomes and microbial communities

CAMITAX

CAMITAX: Taxon labels for microbial genomes

OPAL

OPAL: Open-community Profiling Assessment tooL

AMBER

AMBER: Assessment of Metagenome BinnERs

second_challenge_evaluation

Repository for codes, analyses and visualizations for the CAMI II challenges

data

Pointers to publicly available assembly, binning, and profiling results

contest_information

File format specifications, Presentation materials and other information

firstchallenge_evaluation

Directory containing example result visualizations and scripts for generating figures and tables

bbx-binning-evaluation-jd

A biobox for CAMI binning evaluation

bbx-profiling-evaluation-dk

BenchmarkingToolkitTutorial

cami-concoct

Biobox of the binning tool CONCOCT for the cami challenge

CAMISIM-DATA

Supplementary data for CAMISIM

docker_profiling_tools

Stefans Collection of Dockerfiles and helper scripts for profiling tools

MetagenomeSimulationPipeline

The metagenome simulation pipeline was permanently moved to its new destination: https://github.com/CAMI-challenge/CAMISIM

bbx-binning-evaluation-ig

evaluation

Evaluation tools

bbx-profiling-evaluation-krona

bioconda-recipes

Conda recipes for the bioconda channel.

CamiClient

CamiIO

docker-camibase-binning-evaluation

docker-camibase-profiling

A container image to use for metagenomic community profiling programs

file_formats

frc_hacking

genome_binning_evaluation

ObjectStorageWrapper

quast

quast_frc

Genome assembly evaluation tool

university-email-domains

Domains used for university-issued email addresses