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Cyril Achard (C-Achard)

C-Achard

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Location:Lausanne, Switzerland

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Cyril Achard's starred repositories

brainglobe-atlasapi

A lightweight python module to interact with atlases for systems neuroscience

Language:PythonLicense:BSD-3-ClauseStargazers:120Issues:0Issues:0

trackastra

Language:PythonLicense:BSD-3-ClauseStargazers:45Issues:0Issues:0

CellSeg3D

A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks

Language:Jupyter NotebookLicense:MITStargazers:59Issues:0Issues:0

DL4MicEverywhere

Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images

Language:Jupyter NotebookLicense:CC-BY-4.0Stargazers:65Issues:0Issues:0

pyxu

Modular and scalable computational imaging in Python with GPU/out-of-core computing.

Language:PythonLicense:MITStargazers:113Issues:0Issues:0

Nx-435_EPFL

Language:Jupyter NotebookLicense:Apache-2.0Stargazers:5Issues:0Issues:0

scanpy

Single-cell analysis in Python. Scales to >1M cells.

Language:PythonLicense:BSD-3-ClauseStargazers:1821Issues:0Issues:0

paga

Mapping out the coarse-grained connectivity structures of complex manifolds.

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:196Issues:0Issues:0

morphodynamics_human_brain_organoid

Stargazers:1Issues:0Issues:0

NanoPyx

Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging

Language:Jupyter NotebookLicense:CC-BY-4.0Stargazers:60Issues:0Issues:0

ultrack

Cell tracking and segmentation software

Language:PythonLicense:BSD-3-ClauseStargazers:71Issues:0Issues:0

DeepLabCut

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

Language:PythonLicense:LGPL-3.0Stargazers:4452Issues:0Issues:0

D-LMBmap

Language:Jupyter NotebookStargazers:32Issues:0Issues:0

pydensecrf

Python wrapper to Philipp Krähenbühl's dense (fully connected) CRFs with gaussian edge potentials.

Language:C++License:MITStargazers:1936Issues:0Issues:0

tutorials

MONAI Tutorials

Language:Jupyter NotebookLicense:Apache-2.0Stargazers:1720Issues:0Issues:0

AmadeusGPT

[NeurIPS 2023] We turn natural language descriptions of behaviors into machine-executable code

Language:Jupyter NotebookLicense:Apache-2.0Stargazers:192Issues:0Issues:0

EmbedSeg-napari

Extending EmbedSeg for use in napari

Language:PythonLicense:BSD-3-ClauseStargazers:8Issues:0Issues:0

napari-segment-blobs-and-things-with-membranes

A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.

Language:PythonLicense:BSD-3-ClauseStargazers:21Issues:0Issues:0

ZeroCostDL4Mic

ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy

Language:Jupyter NotebookLicense:MITStargazers:550Issues:0Issues:0

stardist

StarDist - Object Detection with Star-convex Shapes

Language:PythonLicense:BSD-3-ClauseStargazers:861Issues:0Issues:0

tarrow

Time arrow prediction for live-cell microscopy

Language:PythonLicense:BSD-3-ClauseStargazers:18Issues:0Issues:0

ClearMap2

ClearMap 2.0 with WobblyStitcher, TubeMap and CellMap

Language:Jupyter NotebookLicense:GPL-3.0Stargazers:103Issues:0Issues:0

WNet

Language:PythonStargazers:22Issues:0Issues:0

unsupervised-image-segmentation-by-WNet-with-NormalizedCut

A tensorflow implementation of WNet for unsupervised image segmentation on PASCAL VOC 2012 dataset

Language:PythonLicense:MITStargazers:67Issues:0Issues:0

wnet-unsupervised-image-segmentation

Language:PythonLicense:GPL-3.0Stargazers:25Issues:0Issues:0

EmbedSeg

Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images

Language:PythonLicense:NOASSERTIONStargazers:111Issues:0Issues:0

napari-segment-anything

Segment Anything Model (SAM) native Qt UI

Language:PythonLicense:Apache-2.0Stargazers:188Issues:0Issues:0

tuna

:fish: Python profile viewer

Language:PythonLicense:GPL-3.0Stargazers:1322Issues:0Issues:0

terminal

The new Windows Terminal and the original Windows console host, all in the same place!

Language:C++License:MITStargazers:94434Issues:0Issues:0

ruff

An extremely fast Python linter and code formatter, written in Rust.

Language:RustLicense:MITStargazers:29312Issues:0Issues:0