BushmanLab

INSPIIRED

intSiteCaller

HSC_diversity

cellTypeCompositions

geneTherapyPatientReportMaker

Single patient integration sites report

intSiteUploader

chiva

[Dev] Combined HIV integration site and genomic variant analysis pipeline.

covid_microbiome_2021

eoe-paper

Supporting metadata for the eosinophilic esophagitis study (PRJNA451431)

EpigeneticHeatmapMaker

hiAnnotator

Functions for annotating GRanges objects

hotROCs

ROC curve area matrix and heat map

LDppA

Latent Dirichlet Process Prior Allocation

lsf-scripts

Helper scripts for LSF cluster usage

ltrparser

simIntSiteReads

bilateria

Code for generating figures and statistics for bilaterian animal microbiome project

CancerGeneList

maintain the list of cancer-associated genes

fluSera

Code for "Sera from individuals with narrowly focused influenza virus antibodies rapidly select viral escape mutations in ovo", A. Davis, 2018

GCcontent

calculate GC percentage for reference genomes with multiple windows

genomicHeatmapMaker

iGUIDE

Bioinformatic pipeline for identifying dsDNA breaks induced by designer nucleases (ie. Cas9).

intSiteRetriever

makeUCSCHubFromBedFiles

make customer UCSC genome browser hub from bed files

PacBio_Phage_Bact_Modification

PLEASE

Data and analysis releated to the Pediatric Longitudinal Study of Elemental Diet and Stool Microbiome Composition study

viral-transmission

Code and metadata for viral transmission project