Bruno Di Geronimo's starred repositories
TreeViewer
Cross-platform software to draw phylogenetic trees
PoreAnalyser
PoreAnalyser is package written by @DSeiferth that expands HOLE results to consider asymmetry and estimate conductance
handson-ml3
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.
PeSTo-Carbs
Geometric Deep Learning for Prediction of Protein-Carbohydrate Binding Interfaces
papers_for_protein_design_using_DL
List of papers about Proteins Design using Deep Learning
Awesome-Diffusion-Models
A collection of resources and papers on Diffusion Models
ring-pymol
This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua
PythonTUBS
Python introduction for life scientists
sanm-path-gen
Constructing path-CV for advanced protein free energy simulations
MolecularNodes
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
getcontacts
Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation
GetContacts_analysis
Analysis tool for GetContact Frequencies
gatech_machine_learning
Machine Learning workshops developed by Christopher Blanton, Ph.D. for Georgia Institute of Technology Partnership for an Advanced Computing Enviornment
masterclass-22-09
Repository of the data for the PLUMED Masterclass 22.9
metadynminer3d
Package for reading, analysis and visualization of metadynamics HILLS with 3 collective variables (addendum to metadynminer)
exprorer_msmd
MSMD (mixed-solvent molecular dynamics) engine and analysis tools