Brogrammer94

Human_DLPFC_Deconvolution

Visium_SPG_AD

Visium SPG AD project (n = 10) using Visium Spatial Proteogenomics (Visium-SPG) on dissections from the inferior temporal cortex (ITC) from Alzheimer's disease cases and controls.

bbi-dmux

scDIOR

scDIOR: Single cell data IO softwaRe

GPTCelltype

Docker-OSX

Run macOS VM in a Docker! Run near native OSX-KVM in Docker! X11 Forwarding! CI/CD for OS X Security Research! Docker mac Containers.

CodeEdit

CodeEdit App for macOS – Elevate your code editing experience. Open source, free forever.

autocomplete

IDE-style autocomplete for your existing terminal & shell

dotfiles

:wrench: .files, including ~/.macos — sensible hacker defaults for macOS

Motrix

A full-featured download manager.

Searchlight2

Rapid analysis and visualisation for bulk RNA-seq, psuedo-bulk RNA-seq, GeoMx and Proteomic datasets.

zsh-autocomplete

🤖 Real-time type-ahead completion for Zsh. Asynchronous find-as-you-type autocompletion.

cheat.sh

the only cheat sheet you need

knowledgebase

recipes that save time

VISION

Signature Analysis and Visualization for Single-Cell RNA-seq

sc-type

TOSICA

Transformer for One-Stop Interpretable Cell-type Annotation

ChatGPT-Data-Science-Prompts

A repository of 60 useful data science prompts for ChatGPT

ITK

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

miloDE

Framework for sensitive DE testing (using neighbourhoods)

tidytuesday

:bar_chart: :paintbrush: Data visualization collection

neovim-for-newbs

a simple lua neovim configuration for newbs

pyrovelocity

𝒫robabilistic modeling of RNA velocity ⬱

cell2sentence-ft

Cell2Sentence turns scRNA-seq data into text for LLM training.

scRNA-seq_analysis

Single cell RNA-seq analysis bundle

scFlow

Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.

scRNA-tools

Table of software for the analysis of single-cell RNA-seq data.

spatstat

Umbrella package of the 'spatstat' family................

napari-clusters-plotter

A napari plugin for clustering objects according to their properties.

3D-atlas-reverse-mapping

This repository contains a Jupyter Notebook that demonstrates the reverse mapping of the 3D atlas onto an imaged section.