Brody-Lab's repositories
chronic_neuropixels
Repository of code, data and CAD files associated with Luo*, Bondy* et al (2020). "An approach for long-term, multi-probe Neuropixels recordings in unrestrained rats"
PulseInputDDM.jl
A Julia library for fitting DDMs to pulse-based evidence accumulations task data
jbreda_animal_training
Repository for the ingestion, cleaning and visualization of behavioral experiments
DePasquale-eLife-2024
Data and analysis notebooks for DePasquale et. al eLife 2024
flexible_decision_making_training
Training code for the rat flexible decision-making task
accumulation-model
Code for forward and backwards analytical solution to a drift diffusion advection model with pulse-based evidence
bl_pipeline_python
Python Data pipeline for BrodyLab
carlos_lowrank_inference_valente_ostojic
Fitting low-rank RNNs to neural trajectories (LINT method).
trialhistory_lapses_EA
This repository contains code for generating figures for the manuscript "Trial-history biases in evidence accumulation can give rise to apparent lapses"
adrian_striatum_analysis
code for wrangling and organizing striatum ephys recordings and associated GLM fits
boydmeredith_training_report
GUI to monitor performance with training on PBups pipeline
Brody-Lab.github.io
This the lab wiki
datajoint-tutorials
Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples
mouse_npx_holders
3D files for chronic neuropixel holders modified by Jesse Kaminsky and Jorge Yanar from holders in Luo, Bondy et al. 2020.
neu_437_public
Public-facing repository for NEU 437 problem sets. Includes python notebooks (without answers) and associated data.
rnn_linearization
Code about linearization of RNNs
SGLXMetaToCoords
Code to create geometry files for sorting from SpikeGLX metadata