BrainCircuits.io's repositories
circuitmap
Django application serving data for synapse-guided circuit mapping in CATMAID
arbor
A python implementation of (some of) Arbor.js and related tools
bcio-discussion
Discussion about regions, cell types, papers etc.
catalysis
Python tools for interacting with CATMAID
CATMAID
Collaborative Annotation Toolkit for Massive Amounts of Image Data
catpy
Python client for the CATMAID API
CloudVolumeServer
Flask application to serve data via CloudVolume
connectomics-vis-survey.github.io
Resources for the EuroVis 2022 survey paper on Visualization and Analysis in High-Resolutiuon Connectomics
fafbseg-py
Tools to work with manual and auto-segmented data in FAFB
napari
napari: a fast, interactive, multi-dimensional image viewer for python
navis
Python library for analysis of neuroanatomical data.
neuroglancer
WebGL-based viewer for volumetric data
neuroglancer-json-schemas
JSON Schemas for neuroglancer data structures
OFS-EM-Connectomics
Code and data for the 2021 Open for Science tutorial for EM connectomics.
pymaid
Collection of Python 3 tools to work with neuron data from CATMAID servers
pytorch-3dunet
3D U-Net model for volumetric semantic segmentation written in pytorch
react-neuroglancer
React component wrapper for neuroglancer