Bondoki / JBFM

Simulation application of the bond-fluctuation model for educational purpose.

JBFM

Mirror clone of the JBFM to simulate polymeric systems with the bond-fluctuation model 1 2 for educational purpose.

Usage with GUI

Run the application by typing into your favorite shell

$ cd /path/to/JBFM.jar/
$ java -jar JBFM.jar

Usage without GUI

For running the application as simulation tool, you first need to create a file with JBFM with GUI (save button).

$ cd /path/to/JBFM.jar/
$ java -jar JBFM.jar
# create conformation and file e.g. poly.bfm (save button)
# exit the GUI of JBFM
# to further run the simulation without GUI type and dump output into file
$ java -jar JBFM.jar --nogui directory filename simulationtime savetime
# e.g. java -jar JBFM.jar --nogui ./ poly.bfm 10000 1000
# open the GUI and load the conformation