Boli-trainee

latent-diffusion

High-Resolution Image Synthesis with Latent Diffusion Models

Vim

[ICML 2024] Vision Mamba: Efficient Visual Representation Learning with Bidirectional State Space Model

Awesome-Mamba-Papers

Awesome Papers related to Mamba.

CLIPstyler

Official Pytorch implementation of "CLIPstyler:Image Style Transfer with a Single Text Condition" (CVPR 2022)

PORPOISE

Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell

DeepLIIF

Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]

Awesome-Mamba

Awesome list of papers that extend Mamba to various applications.

istar

pycytominer

Python package for processing image-based profiling data

cellpainting-gallery

Cell Painting Gallery

2024_Chandrasekaran_NatureMethods

2022_Haghighi_NatureMethods

High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations

CFine

CLIP-Driven Fine-grained Text-Image Person Re-identification

MUSE

MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states for spatially resolved transcriptomics data.

Hanchao-Zhang.github.io

Personal Website

SpaGE

Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data

lincs-cell-painting

Processed Cell Painting Data for the LINCS Drug Repurposing Project

cTPnet

cTPnet Package

sciPENN

IGI-DL

Code for ST_IGI package

MHFAN

Cell localization and counting: 1) Exponential Distance Transform Maps for Cell Localization; 2) Multi-scale Hypergraph-based Feature Alignment Network for Cell Localization; 3) Lite-UNet: A lightweight and efficient network for cell localization

SCP_recommendations

Initial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments. The code is distributed under an MIT license.

HGGEP

Gene Expression Prediction from Histology Images via Hypergraph Neural Networks

FSOL

Few-shot Object Localization

lincs-profiling-complementarity

Analyzing and comparing signal found in different profiling technologies

AntiFormer

Knowledge graph enhanced LLM for binding affinity prediction

Using-Cell-Morphology-Gene-Expression-Features-and-Structural-Fingerprints-to-Aid-Detection-of-Mito

Using Cell Morphology, Gene Expression Features and Structural Fingerprints to Aid Detection of Mitochondrial Toxicants

HAMRLNC

High-throughput pipeline for modified mRNA annotation and long non-coding RNA annotation

2024_Chandrasekaran_Morphmap

crossmodalnet

CrossmodalNet