Boettiger Lab's repositories
ORCA-public
For automated processing of ORCA data
Hafner2022
code associated with Hafner 2022 paper on cohesin and ctcf degron lines
academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
ChromatinImaging
Super-resolution chromatin tracing 2018
fluidics-control
stand alone controller of automated fluid handling system.
matlab-storm
Tools for STORM analysis in Matlab. This is a fork of the matlab-storm from ZhuangLab
microscope-control
updated branch of the storm-control / Hal software
model-transcription-looping
Source-code for simulations and analyses of transcription-looping
nanoscope-control
new version of Hal microscope control software (previously storm-control)
Pitx1-ORCA-2023
Code for simulations and figures for our work on Pitx1
Polycomb-ORCA-2022
Repository for analysis and simulation scripts associated with our work on how Polycomb factors shape 3D organization of hox-gene clusters
SEclustering-2024
Software and scripts for our work on super-enhancer clustering in mouse embryonic stem cells