BoWangXJTU's repositories
py
Repository to store sample python programs for python learning
polymorphology
Analyze genome-wide distributions of polymorphisms in relation to gene features
Col-CEN
Resources for the Col-CEN reference genome assemblies
mmdetection
OpenMMLab Detection Toolbox and Benchmark
methccs
Detecting DNA methylation from PacBio CCS reads
CHM13
The complete sequence of a human genome
fp-growth
Python implementation of the Frequent Pattern Growth algorithm
Multi_scale_evolution
Multi-scale evolution analysis of with aid of protein 3D structures for 332 different yeast species plus 11 fungal species.
Scripts_for_GB
The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
datasets
Datasets generated by our lab.
Bioinformatics-with-Python-Cookbook-Second-Edition
Bioinformatics with Python Cookbook Second Edition, published by Packt
CMplot
📊 Circular and Rectangular Manhattan Plot
deep_learning_object_detection
A paper list of object detection using deep learning.
shasta
De novo assembly from Oxford Nanopore reads.
PRINGO
Proteomic Information Navigated Genomic Outlook (PRINGO), which is a set of custom R scripts, is for visualisation of genomic features. PRINGO combines results from Secretome prediction pipeline (INRAE Nancy, France), genome stats, and other pipelines including Transposon Identification Nominative Genome Overview (TINGO; Morin et al. 2019).
HiCtrans
HiCtrans is a pipeline to call translocations from Hi-C data
DupGen_finder
A pipeline used to identify different modes of duplicated gene pairs
esATAC
Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis
pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
flair
Full-Length Alternative Isoform analysis of RNA
NextDenovo
Fast and accurate de novo assembler for third generation sequencing (TGS) reads
Juicebox
Visualization and analysis software for Hi-C data -
3d-dna
3D de novo assembly (3D DNA) pipeline
HiC-Pro
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
SALSA
SALSA: A tool to scaffold long read assemblies with Hi-C data