BlueBrain / Ultraliser

Reconstruction of watertight meshes, annotated volumes and center line skeletons of neuroscience spatial structures from non-watertight inputs, segmented masks, skeletons of NGV morphologies and volumes.

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Implement an SWC exporter for skeletonized neurons

marwan-abdellah opened this issue · comments

Incrementally, implement a neuron SWC exporter from the skeletonized dataset.
The exporter should:

  1. Initially, export all the valid branches as dendrites, even including the spines.
  2. Categorize the branches into either axons or dendrites.
  3. Recognize the apical dendrites from the basal dendrites.
  4. Filter the spines and export them individually.

First implementation is done and neurons can be exported.
Next: Branch types.

Note: Account for the removed branches due to loop merging.