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BlueBrain / Ultraliser

Reconstruction of watertight meshes, annotated volumes and center line skeletons of neuroscience spatial structures from non-watertight inputs, segmented masks, skeletons of NGV morphologies and volumes.

Home Page:https://portal.bluebrain.epfl.ch

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Spine detection from skeletons

marwan-abdellah opened this issue · comments

commented

An important milestone to detect the spines from the skeleton and then find the corresponding geometry in the input mesh (or volume).

Process

  • The geometry is re-voxelized with better resolution and then the exact morphology of the skeleton is obtained.
  • The correct orientation of the spines is detected and then, they are all exported into mesh and h5 file formats.