BlueBrain / Ultraliser

Reconstruction of watertight meshes, annotated volumes and center line skeletons of neuroscience spatial structures from non-watertight inputs, segmented masks, skeletons of NGV morphologies and volumes.

Home Page:https://portal.bluebrain.epfl.ch

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Force minimum radius value in ultra*Morpho2Mesh

marwan-abdellah opened this issue · comments

Certain morphologies (mainly neuronal) have almost zero-radius samples. This issue makes reconstructing a single and continuous manifold almost impossible. Therefore, we must implement a feature to detect such samples and replace them either with interpolated values or with a minimum given by the user.

This step requires also making a quick pre-processing to the skeletons to be able to enumerate all the elements affecting the mesh reconstruction.