Beast code in Giters

eulbyrreb's starred repositories

bfc

High-performance error correction for Illumina resequencing data

Language:TeXMIT6800

nQuire

A statistical framework for ploidy estimation using NGS short-read data

Language:CMIT5400

learning-cmake

learning cmake

Language:CMakeGPL-2.0318100

cmake-examples-Chinese

快速入门CMake,通过例程学习语法。在线阅读地址：https://sfumecjf.github.io/cmake-examples-Chinese/

Language:C++236000

ntCard

Estimating k-mer coverage histogram of genomics data

Language:C++MIT7600

neat-genreads

NEAT read simulation tools

Language:PythonNOASSERTION9300

pirs

profile basd Illumina pair-end Reads Simulator

Language:C++GPL-2.02400

vg

tools for working with genome variation graphs

Language:C++NOASSERTION109100

wtdbg

A fuzzy Bruijn graph approach to long noisy reads assembly

Language:C3900

canu

A single molecule sequence assembler for genomes large and small.

Language:C++65200

EAGLE

Enhanced Artificial Genome Engine: next generation sequencing reads simulator

Language:C++BSD-3-Clause3200

hisat2

Graph-based alignment (Hierarchical Graph FM index)

Language:C++GPL-3.046700

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Language:CNOASSERTION175300

smudgeplot

Inference of ploidy and heterozygosity structure using whole genome sequencing data

Language:RApache-2.022400

genomescope2.0

Reference-free profiling of polyploid genomes

Language:RApache-2.09600

cosmo

Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.

Language:C++GPL-3.05100

KMC

Fast and frugal disk based k-mer counter

Language:C++25900

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Language:CGPL-3.0150300

trinityrnaseq

Trinity RNA-Seq de novo transcriptome assembly

Language:PerlBSD-3-Clause81700

GFA-spec

Graphical Fragment Assembly (GFA) Format Specification

Language:Makefile19100

bcalm

compacted de Bruijn graph construction in low memory

Language:PythonMIT9900

Bandage

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Language:C++GPL-3.057800

bifrost

Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs

Language:C++BSD-2-Clause20100