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Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data
A reference panel guided topological structure annotation of Hi-C data
Supervised learning on phylogeneticallydistributed data
LAMPS: Sequence analysis pipeline for 2C-ChIP and 5C products
PhyloPGM
Phylogenetic Manifold Regularization: A semi-supervised approach to predict transcription factor binding sites
Sequence-based predictor of chromosomal compartments