BiomedSciAI / histocartography

A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.

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Nuclei instance types

Abbas009 opened this issue · comments

Really appreciate your work guys.
Can we draw an instance map for the specific type of nuclei? e.g only epithelium etc. From nuclei extractor or during visualization?
Example Images are in the link:
https://drive.google.com/drive/folders/1giWG6V-daElfYHtVMnFeAdbm2D_Efmcp?usp=sharing

Currently, we do not have the nuclei classification integrated in the library.

You can download the original HoVerNet model and pass to the nuclei detector to get the nuclei instance map for all nuclei types.