Tong LI's repositories
BFAutofocus
a Micro-Manager plugin to find physical cell z-focus plane with transmitted-light microscopy images
bioinfotongli.github.io
Code that'll help you kickstart a personal website that showcases your work as a software developer.
cellh5
CellH5 is an HDF5 data format for cell-based assays in high-throughput microscopy, which stores high-dimensional image data along with inter-object relations in graphs.
Conf_notes
Share knowledges about the conferences that I have attended
deeplearning4j
Deeplearning4j, ND4J, DataVec and more - deep learning & linear algebra for Java/Scala with GPUs + Spark
dl4j-test-resources
Repo for the test data used in dl4j's tests. This is meant to be a standalone repo so this repo is only used during tests
footmark
I leave no trace of wings in the air, but I am glad I have had my flight.
gaps
A Genetic Algorithm-Based Solver for Jigsaw Puzzles :cyclone:
Icy-MicroManager
Micro Manager plugin for Icy
ilastik
ilastik-shell, applets, and workflows to string them together.
imagepy
Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy
jupyter-omeroanalysis-desktop
Run OMERO clients in a Linux desktop using Jupyter
MAARS
Fiji/Micro-Manager plugin for Mitotic Analysis And Recording System
napari-misc-viewer
Customized loader of different images formats
Python-for-Bioimage-Analysis
This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biological imaging.
registrationWorkflows_i2k_2020
Automatic and manual workflows course I2K 2020
TrackMate
TrackMate is your buddy for your everyday tracking.
vim-template
Simple templates plugin for Vim
yapic
Yet Another Pixel Classifier (based on deep learning)