Bioconductor / bioconductor_docker

Docker Containers for Bioconductor - NEW!

https://bioconductor.org/help/docker/

Bioconductor/bioconductor_docker Issues

Lighter bioconductor container in the future?
Closed a month ago2
Unable to start container process: exec: "/init": stat /init: no such file or directory: unknown
Closed a month ago4
ERROR; return code from pthread_create() is 22 when calling preprocessCore::normalize.quantiles()
Closed 8 months ago12
Strange issue running image fedora 36 vs 37 - rocker/rstudio::devel works, as does home build
Updated 4 months ago9
Cannot install packages with BiocManager::install during docker build
Closed 6 months ago3
Update bioconductor_docker images for consistency w/ upstream Rocker images
Updated 6 months ago1
README continues to mention AnVIL::
Closed 7 months ago2
update README
Updated 7 months ago
'binary' package shared objects are not compatible with the docker container
Closed a year ago4
container defaults to installing packages from source, rather than binary
Closed a year ago2
RELEASE_3_17: *.so shared objects from container_packages in /usr/local/lib/R/site-library packages not loading
Closed a year ago9
Make an ARM image available
Closed a year ago10
Incorrect references to `rockerdev` Rocker organization in release process document
Closed a year ago1
Conflicting definitions of "devel"/"release" between actual Bioconductor and bioconductor_docker
Closed 2 years ago12
libpath to put the custom lib folder in the front
Closed a year ago11
Unable to install additional Bioconductor packages.
Closed 2 years ago2
Issue with the stringi package in RELEASE_3_16
Closed 2 years ago19
Errors with release 3.16
Closed 2 years ago3
leidenalg for Bioc pkg scBubbletree
Updated 2 years ago
Could not connect to the R session on RStudio Server
Closed 2 years ago1
Failed bioconductor package installations do not cause docker builds to stop
Updated 2 years ago3
Update to R4.2.1
Closed 2 years ago1
Add python3.8-venv to the bioconductor_docker container?
Closed 2 years ago
Pip install torch
Updated 2 years ago3
R/Rstudio version conflict
Updated 2 years ago7
R graphics engine version 14 is not supported by this version of RStudio
Updated 2 years ago4
Update `latest` version to be the same as `RELEASE_3_13`
Closed 3 years ago5
volume setup for caching basilisk infrastructure?
Updated 3 years ago1
Missing `checkbashisms` script creates warning from running check
Updated 3 years ago
Error in .install_repos, argument "force" is missing, with no default
Closed 3 years ago3
Any call to `ggplot2` in the current `bioconductor_docker:devel` image makes `R`/`Rstuido` **CRASH**
Updated 3 years ago4
Install parallel BLAS on bioconductor_docker image
Updated 3 years ago
BiocManager attached on start up
Closed 3 years ago4
rocker version for bioc-devel
Closed 3 years ago2
bug: new library path auto added to .libPaths() upon mounting a volume
Closed 3 years ago1
Why not use R_LIBS_* variables instead of hard-coded container library?
Updated 3 years ago6
Add canary testing for package installation in built containers
Closed 3 years ago
Problems with packagemanager.rstudio.com
Closed 3 years ago3
missing harfbuzz freetype2 fribidi
Closed 3 years ago5
Question: When will Docker for Bioconductor 3.12 be available?
Closed 4 years ago
Link to localhost in Documentation Gives SSL Error
Closed 4 years ago2
What is the recommended way to run R CMD check with these containers?
Updated 4 years ago7
Pulling devel images fails: "unauthorized: authentication required"
Closed 4 years ago1
RStudio debugger broken
Closed 4 years ago1
R devel version lagging significantly
Closed 4 years ago4
Update documentation to reflect no user bioc
Closed 4 years ago1
New docker images fail running apt-get update?
Closed 4 years ago2
Issue running my bioc docker using volumes
Closed 4 years ago1
permission issue - mounting files from host
Closed 4 years ago25